If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 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'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ), 'gf_id' => 'HOM05D000851', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000851' ), 'data_identifier' => 'HOM05D000851', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000851', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '702', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23390' => 'bna', 'A05p14820' => 'bna', 'A06p05700' => 'bna', 'A06p15200' => 'bna', 'A07p29200' => 'bna', 'A07p37150' => 'bna', 'A07p40470' => 'bna', 'A08p34960' => 'bna', 'A09p43810' => 'bna', 'A09p59570' => 'bna', 'A10p22500' => 'bna', 'Aa31LG11G12970' => 'aar', 'Aa31LG3G6770' => 'aar', 'Aa31LG3G6780' => 'aar', 'Aa31LG4G10240' => 'aar', 'Aa31LG4G5040' => 'aar', 'Aa31LG7G3770' => 'aar', 'Aa31sc20G20' => 'aar', 'Actinidia04944' => 'ach', 'Actinidia06496' => 'ach', 'Actinidia12375' => 'ach', 'Actinidia16110' => 'ach', 'Actinidia17212' => 'ach', 'Actinidia17464' => 'ach', 'Actinidia26512' => 'ach', 'Actinidia32810' => 'ach', 'Actinidia33764' => 'ach', 'Actinidia36645' => 'ach', 'Actinidia37679' => 'ach', 'Actinidia37680' => 'ach', 'Ah.06g192030' => 'amhyb', 'Ah.11g045590' => 'amhyb', 'Ah.11g049890' => 'amhyb', 'Ah.12g060120' => 'amhyb', 'AL1G19230' => 'aly', 'AL1G31550' => 'aly', 'AL2G30190' => 'aly', 'AL2G34710' => 'aly', 'AL4G25580' => 'aly', 'AL6G27730' => 'aly', 'Aqoxy2G03578' => 'aox', 'Aqoxy3G03185' => 'aox', 'Aqoxy3G04087' => 'aox', 'Aqoxy5G00304' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0I6I28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.272VPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCE16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU6W4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLY1RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY5DEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYBK8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9FPTI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NF83JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM85UB' => 'arhy', 'AT1G08800' => 'ath', 'AT1G18990' => 'ath', 'AT1G70750' => 'ath', 'AT1G74830' => 'ath', 'AT2G30690' => 'ath', 'AT5G16720' => 'ath', 'ATR0051G052' => 'atr', 'ATR0665G370' => 'atr', 'ATR0753G094' => 'atr', 'Atru.chr1.1901' => 'acertr', 'Atru.chr11.638' => 'acertr', 'Atru.chr2.860' => 'acertr', 'Atru.chr5.1608' => 'acertr', 'Atru.chr9.2367' => 'acertr', 'Atru.chr9.2368' => 'acertr', 'AUR62001061' => 'cqu', 'AUR62004890' => 'cqu', 'AUR62008314' => 'cqu', 'AUR62011916' => 'cqu', 'AUR62018212' => 'cqu', 'AUR62021782' => 'cqu', 'AUR62021783' => 'cqu', 'AUR62028611' => 'cqu', 'AUR62032231' => 'cqu', 'AUR62032336' => 'cqu', 'AUR62038702' => 'cqu', 'BcaB02g06969' => 'bca', 'BcaB02g10338' => 'bca', 'BcaB03g14470' => 'bca', 'BcaB05g22281' => 'bca', 'BcaB05g24872' => 'bca', 'BcaB07g31921' => 'bca', 'BcaB07g34135' => 'bca', 'BcaB08g35890' => 'bca', 'BcaC02g11162' => 'bca', 'BcaC04g18856' => 'bca', 'BcaC04g18857' => 'bca', 'BcaC05g25799' => 'bca', 'BcaC07g38458' => 'bca', 'BcaC07g41279' => 'bca', 'BcaC08g46514' => 'bca', 'BcaC08g46905' => 'bca', 'BcaC08g46914' => 'bca', 'BcaC08g46947' => 'bca', 'BcaNung06269' => 'bca', 'BolC2t08858H' => 'bol', 'BolC3t18923H' => 'bol', 'BolC4t23520H' => 'bol', 'BolC4t27477H' => 'bol', 'BolC5t29446H' => 'bol', 'BolC5t30439H' => 'bol', 'BolC6t38425H' => 'bol', 'BolC6t39541H' => 'bol', 'BolC6t39920H' => 'bol', 'BolC8t47891H' => 'bol', 'BolC8t48870H' => 'bol', 'BolC8t51841H' => 'bol', 'BolC9t58868H' => 'bol', 'BraA04t17866Z' => 'bra', 'BraA05t20410Z' => 'bra', 'BraA06t23780Z' => 'bra', 'BraA06t24634Z' => 'bra', 'BraA07t30559Z' => 'bra', 'BraA07t31277Z' => 'bra', 'BraA07t31590Z' => 'bra', 'BraA08t35407Z' => 'bra', 'BraA09t41334Z' => 'bra', 'BraA10t44309Z' => 'bra', 'C02p28140' => 'bna', 'C03p66510' => 'bna', 'C04p19830' => 'bna', 'C04p59690' => 'bna', 'C05p06870' => 'bna', 'C05p17390' => 'bna', 'C06p33090' => 'bna', 'C06p44820' => 'bna', 'C06p48840' => 'bna', 'C08p12300' => 'bna', 'C08p42860' => 'bna', 'C09p60350' => 'bna', 'CAN.G1241.14' => 'can', 'CAN.G134.63' => 'can', 'CAN.G1536.1' => 'can', 'CAN.G2029.1' => 'can', 'CAN.G628.57' => 'can', 'CAN.G699.2' => 'can', 'CAN.G999.4' => 'can', 'CANSAT01G1353' => 'cansat', 'CANSAT01G2099' => 'cansat', 'CANSAT54G2416' => 'cansat', 'CANSAT64G0489' => 'cansat', 'CANSAT80G1717' => 'cansat', 'CARHR008720' => 'chi', 'CARHR019610' => 'chi', 'CARHR064010' => 'chi', 'CARHR068140' => 'chi', 'CARHR124180' => 'chi', 'CARHR196460' => 'chi', 'CARHR216530' => 'chi', 'Carub.0001s0814' => 'cru', 'Carub.0001s1862' => 'cru', 'Carub.0002s1749' => 'cru', 'Carub.0002s2161' => 'cru', 'Carub.0004s1186' => 'cru', 'Carub.0006s1494' => 'cru', 'Ca_04718_v3' => 'car', 'Ca_05825_v3' => 'car', 'Ca_09433_v3' => 'car', 'Ca_09700_v3' => 'car', 'Ca_11590_v3' => 'car', 'Ca_21868_v3' => 'car', 'Ca_26579_v3' => 'car', 'Cc01_g18640' => 'ccan', 'Cc02_g30970' => 'ccan', 'Cc04_g16060' => 'ccan', 'Cc11_g08230' => 'ccan', 'CDE05G0739' => 'cde', 'CDE05G3084' => 'cde', 'CDE06G0252' => 'cde', 'CDE07G0804' => 'cde', 'CDE07G0982' => 'cde', 'CDE09G0738' => 'cde', 'Cfa002348' => 'cfa', 'Cfa006392' => 'cfa', 'Cfa007816' => 'cfa', 'Cfa014984' => 'cfa', 'Cfa019035' => 'cfa', 'Ciclev10011001m.g' => 'ccl', 'Ciclev10014119m.g' => 'ccl', 'Ciclev10018827m.g' => 'ccl', 'Ciclev10024191m.g' => 'ccl', 'Ciclev10027718m.g' => 'ccl', 'CiPaw.03G071600' => 'cil', 'CiPaw.04G047200' => 'cil', 'CiPaw.04G183500' => 'cil', 'CiPaw.05G193600' => 'cil', 'CiPaw.06G048800' => 'cil', 'CiPaw.07G069700' => 'cil', 'CiPaw.11G034600' => 'cil', 'CiPaw.12G022000' => 'cil', 'ClCG01G006360' => 'cla', 'ClCG01G014240' => 'cla', 'ClCG02G016870' => 'cla', 'ClCG07G000700' => 'cla', 'COL.COLO4_08269' => 'col', 'COL.COLO4_10158' => 'col', 'COL.COLO4_13096' => 'col', 'Cpa.g.c36424' => 'cpa', 'Cpa.g.c46554' => 'cpa', 'Cpa.g.sc162.2' => 'cpa', 'Cpa.g.sc2.234' => 'cpa', 'Cpa.g.sc203.10' => 'cpa', 'CsaV3_1G008080' => 'csa', 'CsaV3_2G003900' => 'csa', 'CsaV3_5G028320' => 'csa', 'CsaV3_6G037140' => 'csa', 'CsaV3_6G037150' => 'csa', 'CSS0010645' => 'camsi', 'CSS0018554' => 'camsi', 'CSS0018646' => 'camsi', 'CSS0018702' => 'camsi', 'CSS0019644' => 'camsi', 'CSS0020864' => 'camsi', 'CSS0021301' => 'camsi', 'CSS0025464' => 'camsi', 'CSS0034952' => 'camsi', 'CSS0046457' => 'camsi', 'DCAR_000363' => 'dca', 'DCAR_006635' => 'dca', 'DCAR_007314' => 'dca', 'DCAR_012523' => 'dca', 'DCAR_021550' => 'dca', 'DCAR_026091' => 'dca', 'DCAR_026789' => 'dca', 'DCAR_030242' => 'dca', 'Dinv05261' => 'din', 'Dinv07194' => 'din', 'Dinv07985' => 'din', 'Dinv13113' => 'din', 'Dinv13114' => 'din', 'Dinv18616' => 'din', 'Dinv18617' => 'din', 'Dinv22455' => 'din', 'Dinv26232' => 'din', 'Dinv26233' => 'din', 'Dinv28048' => 'din', 'Dinv28207' => 'din', 'Dinv28208' => 'din', 'Dinv34589' => 'din', 'Duzib068G1195' => 'dzi', 'Duzib084G0864' => 'dzi', 'Duzib128G1462' => 'dzi', 'Duzib133G0219' => 'dzi', 'Duzib133G0642' => 'dzi', 'Duzib205G0246' => 'dzi', 'Duzib211G0301' => 'dzi', 'Duzib248G0058' => 'dzi', 'Duzib251G0412' => 'dzi', 'Duzib268G0392' => 'dzi', 'ECA232G1500' => 'eca', 'ECA233G0179' => 'eca', 'ECA234G1132' => 'eca', 'ECA236G2927' => 'eca', 'ECA238G2977' => 'eca', 'ECA246G4088' => 'eca', 'ECA247G0097' => 'eca', 'ECA247G2041' => 'eca', 'ECA248G1828' => 'eca', 'EL10Ac2g03167' => 'bvu', 'EL10Ac4g09075' => 'bvu', 'EL10Ac5g10445' => 'bvu', 'EL10Ac5g10559' => 'bvu', 'EL10Ac5g10875' => 'bvu', 'Eucgr.B02126' => 'egr', 'Eucgr.G02159' => 'egr', 'Eucgr.J01598' => 'egr', 'FAN02G3896' => 'fan', 'FAN04G0328' => 'fan', 'FAN05G0024' => 'fan', 'FAN05G1063' => 'fan', 'FAN07G1871' => 'fan', 'FAN08G1814' => 'fan', 'FAN09G3454' => 'fan', 'FAN12G2731' => 'fan', 'FAN13G2492' => 'fan', 'FAN14G2146' => 'fan', 'FAN14G3846' => 'fan', 'FAN15G0482' => 'fan', 'FAN17G3037' => 'fan', 'FAN18G3653' => 'fan', 'FAN19G3077' => 'fan', 'FAN20G1571' => 'fan', 'FAN22G0251' => 'fan', 'FAN24G1431' => 'fan', 'FAN26G1270' => 'fan', 'FAN26G3462' => 'fan', 'FAN27G2886' => 'fan', 'FAN28G1942' => 'fan', 'FvH4_1g28750' => 'fve', 'FvH4_1g28751' => 'fve', 'FvH4_2g22220' => 'fve', 'FvH4_4g34051' => 'fve', 'FvH4_5g16010' => 'fve', 'FvH4_6g02500' => 'fve', 'Glyma.02G245200' => 'gma', 'Glyma.03G248800' => 'gma', 'Glyma.04G177100' => 'gma', 'Glyma.05G139600' => 'gma', 'Glyma.06G187900' => 'gma', 'Glyma.08G094900' => 'gma', 'Glyma.09G120900' => 'gma', 'Glyma.10G034200' => 'gma', 'Glyma.13G120400' => 'gma', 'Glyma.14G215300' => 'gma', 'Glyma.19G246400' => 'gma', 'Gohir.A01G150000' => 'ghi', 'Gohir.A03G119100' => 'ghi', 'Gohir.A07G173600' => 'ghi', 'Gohir.A07G210300' => 'ghi', 'Gohir.A08G045500' => 'ghi', 'Gohir.A11G028090' => 'ghi', 'Gohir.A11G250100' => 'ghi', 'Gohir.A12G174500' => 'ghi', 'Gohir.D01G143100' => 'ghi', 'Gohir.D02G142400' => 'ghi', 'Gohir.D07G179900' => 'ghi', 'Gohir.D07G216300' => 'ghi', 'Gohir.D08G055900' => 'ghi', 'Gohir.D11G031300' => 'ghi', 'Gohir.D11G260600' => 'ghi', 'Gohir.D12G177200' => 'ghi', 'Gorai.001G200900' => 'gra', 'Gorai.002G176500' => 'gra', 'Gorai.004G056900' => 'gra', 'Gorai.005G159900' => 'gra', 'Gorai.007G034200' => 'gra', 'Gorai.007G279100' => 'gra', 'Gorai.008G189600' => 'gra', 'Gorai.013G104100' => 'gra', 'GSVIVG01000763001' => 'vvi', 'GSVIVG01008097001' => 'vvi', 'GSVIVG01011703001' => 'vvi', 'GSVIVG01030780001' => 'vvi', 'GSVIVG01036252001' => 'vvi', 'HanXRQChr01g0005281' => 'han', 'HanXRQChr01g0030581' => 'han', 'HanXRQChr02g0045341' => 'han', 'HanXRQChr03g0068611' => 'han', 'HanXRQChr04g0115471' => 'han', 'HanXRQChr04g0118831' => 'han', 'HanXRQChr05g0155211' => 'han', 'HanXRQChr06g0168281' => 'han', 'HanXRQChr08g0212561' => 'han', 'HanXRQChr09g0271441' => 'han', 'HanXRQChr12g0363611' => 'han', 'HanXRQChr14g0444721' => 'han', 'HanXRQChr15g0468051' => 'han', 'HanXRQChr16g0529831' => 'han', 'HanXRQChr17g0567391' => 'han', 'Haze_04382' => 'cav', 'Haze_07412' => 'cav', 'Haze_10939' => 'cav', 'Haze_14259' => 'cav', 'Haze_24557' => 'cav', 'Hma1.2p1_0002F.1_g003030' => 'hma', 'Hma1.2p1_0330F.1_g127460' => 'hma', 'Hma1.2p1_0572F.1_g181110' => 'hma', 'Hma1.2p1_0892F.1_g233390' => 'hma', 'Hma1.2p1_1045F.1_g251420' => 'hma', 'HPP92_004162' => 'vpl', 'HPP92_009442' => 'vpl', 'HPP92_009443' => 'vpl', 'HPP92_016634' => 'vpl', 'HPP92_016635' => 'vpl', 'HPP92_016659' => 'vpl', 'HPP92_016660' => 'vpl', 'HPP92_026341' => 'vpl', 'Hund02696' => 'sun', 'Hund02891' => 'sun', 'Hund06944' => 'sun', 'Hund09388' => 'sun', 'Hund09498' => 'sun', 'Hund09580' => 'sun', 'Lalb_Chr00c06g0404651' => 'lal', 'Lalb_Chr04g0251351' => 'lal', 'Lalb_Chr04g0262191' => 'lal', 'Lalb_Chr06g0162571' => 'lal', 'Lalb_Chr07g0187751' => 'lal', 'Lalb_Chr08g0236091' => 'lal', 'Lalb_Chr11g0070501' => 'lal', 'Lalb_Chr12g0201241' => 'lal', 'Lalb_Chr13g0293701' => 'lal', 'Lalb_Chr13g0298051' => 'lal', 'Lj1g0008175' => 'lja', 'Lj2C1156G2' => 'lonja', 'Lj2C1156T1' => 'lonja', 'Lj3C866T18' => 'lonja', 'Lj4A263T85' => 'lonja', 'Lj4C263G16' => 'lonja', 'Lj4g0012513' => 'lja', 'Lj4g0013415' => 'lja', 'Lj5C118T20' => 'lonja', 'Lj5g0019344' => 'lja', 'Lj6A742G69' => 'lonja', 'Lj7A491T46' => 'lonja', 'Lj9A456T32' => 'lonja', 'LjContig00141g0020815' => 'lja', 'Lsat_1_v5_gn_1_11360' => 'lsa', 'Lsat_1_v5_gn_2_69381' => 'lsa', 'Lsat_1_v5_gn_3_55560' => 'lsa', 'Lsat_1_v5_gn_4_105980' => 'lsa', 'Lsat_1_v5_gn_5_17380' => 'lsa', 'Lsat_1_v5_gn_5_186481' => 'lsa', 'Lsat_1_v5_gn_7_11881' => 'lsa', 'Lsat_1_v5_gn_8_44360' => 'lsa', 'Lsat_1_v5_gn_9_9441' => 'lsa', 'Manes.01G118000' => 'mes', 'Manes.01G200100' => 'mes', 'Manes.06G098700' => 'mes', 'Manes.08G136800' => 'mes', 'Manes.09G150400' => 'mes', 'Manes.14G072200' => 'mes', 'Manes.15G131400' => 'mes', 'Manes.17G080700' => 'mes', 'MBI04_g38147_MAGBIO' => 'mbi', 'MBI05_g23635_MAGBIO' => 'mbi', 'MBI11_g10263_MAGBIO' => 'mbi', 'MBI11_g43388_MAGBIO' => 'mbi', 'MBI12_g08775_MAGBIO' => 'mbi', 'MBI19_g02463_MAGBIO' => 'mbi', 'MBI19_g02464_MAGBIO' => 'mbi', 'MBI19_g46595_MAGBIO' => 'mbi', 'MBI19_g46596_MAGBIO' => 'mbi', 'MD04G1227500' => 'mdo', 'MD05G1203200' => 'mdo', 'MD06G1183700' => 'mdo', 'MD09G1263700' => 'mdo', 'MD10G1190500' => 'mdo', 'MD12G1244200' => 'mdo', 'MD13G1021300' => 'mdo', 'MD14G1189800' => 'mdo', 'MD16G1022600' => 'mdo', 'MD17G1258500' => 'mdo', 'MD17G1259000' => 'mdo', 'Medtr0168s0060' => 'mtr', 'Medtr4g107310' => 'mtr', 'Medtr5g078300' => 'mtr', 'Medtr7g115350' => 'mtr', 'MELO3C002225.2' => 'cme', 'MELO3C004405.2' => 'cme', 'MELO3C005294.2' => 'cme', 'MELO3C014398.2' => 'cme', 'Migut.B01116' => 'egut', 'Migut.D00396' => 'egut', 'Migut.D01888' => 'egut', 'Migut.E00449' => 'egut', 'Migut.I00072' => 'egut', 'Migut.K00899' => 'egut', 'Migut.L00400' => 'egut', 'MSTRG.11432' => 'ama', 'MSTRG.13607' => 'ama', 'MSTRG.15673' => 'ama', 'MSTRG.16967' => 'ama', 'MSTRG.2148' => 'ama', 'Nitab4.5_0000003g0120' => 'nta', 'Nitab4.5_0000026g0290' => 'nta', 'Nitab4.5_0000062g0600' => 'nta', 'Nitab4.5_0000062g0610' => 'nta', 'Nitab4.5_0000086g0300' => 'nta', 'Nitab4.5_0000089g0110' => 'nta', 'Nitab4.5_0000135g0030' => 'nta', 'Nitab4.5_0000642g0120' => 'nta', 'Nitab4.5_0000758g0050' => 'nta', 'Nitab4.5_0000916g0120' => 'nta', 'Nitab4.5_0002247g0120' => 'nta', 'Nitab4.5_0004328g0010' => 'nta', 'Nitab4.5_0008162g0010' => 'nta', 'Nitab4.5_0009486g0040' => 'nta', 'Nitab4.5_0010274g0010' => 'nta', 'Nitab4.5_0011211g0010' => 'nta', 'Nn1g02635' => 'nnu', 'Nn3g17065' => 'nnu', 'Nn3g18296' => 'nnu', 'Nn3g19550' => 'nnu', 'Nn4g22973' => 'nnu', 'Nn4g24258' => 'nnu', 'Oeu014043.1' => 'oeu', 'Oeu016451.4' => 'oeu', 'Oeu038309.1' => 'oeu', 'Oeu038468.1' => 'oeu', 'Oeu039558.1' => 'oeu', 'Oeu039685.3' => 'oeu', 'Oeu054692.1' => 'oeu', 'Oeu058809.1' => 'oeu', 'Oeu059627.1' => 'oeu', 'Oeu062631.3' => 'oeu', 'Os03g0164800' => 'osa', 'Os03g0259900' => 'osa', 'Os03g0708700' => 'osa', 'Os03g0799200' => 'osa', 'Os10g0414800' => 'osa', 'Peaxi162Scf00017g02121' => 'pax', 'Peaxi162Scf00376g00130' => 'pax', 'Peaxi162Scf00496g00111' => 'pax', 'Peaxi162Scf00647g00013' => 'pax', 'Peaxi162Scf00689g00054' => 'pax', 'Peaxi162Scf00719g00312' => 'pax', 'Peaxi162Scf00723g00421' => 'pax', 'PGR042G0670' => 'pgr', 'PGR142G0182' => 'pgr', 'PGR142G1822' => 'pgr', 'PGSC0003DMG400011830' => 'stu', 'PGSC0003DMG400016062' => 'stu', 'PGSC0003DMG400024464' => 'stu', 'PGSC0003DMG400027519' => 'stu', 'PGSC0003DMG400029521' => 'stu', 'PGSC0003DMG400031422' => 'stu', 'PGSC0003DMG400033062' => 'stu', 'Phvul.002G183000' => 'pvu', 'Phvul.003G021800' => 'pvu', 'Phvul.006G103500' => 'pvu', 'Phvul.007G178800' => 'pvu', 'Phvul.008G235700' => 'pvu', 'Phvul.009G183400' => 'pvu', 'Potri.002G042500' => 'ptr', 'Potri.004G087600' => 'ptr', 'Potri.005G220600' => 'ptr', 'Potri.008G132200' => 'ptr', 'Potri.010G109900' => 'ptr', 'Potri.012G073400' => 'ptr', 'Potri.013G043400' => 'ptr', 'Potri.015G068400' => 'ptr', 'Potri.017G129200' => 'ptr', 'Potri.019G007802' => 'ptr', 'Potri.019G012200' => 'ptr', 'Pp3c10_15860' => 'ppa', 'Pp3c14_13350' => 'ppa', 'Pp3c14_13364' => 'ppa', 'Pp3c16_18330' => 'ppa', 'Pp3c1_23170' => 'ppa', 'Pp3c25_7080' => 'ppa', 'Pp3c2_14520' => 'ppa', 'Prupe.1G330400' => 'ppe', 'Prupe.3G161200' => 'ppe', 'Prupe.5G182400' => 'ppe', 'Prupe.6G346700' => 'ppe', 'Prupe.8G128800' => 'ppe', 'Prupe.8G229600' => 'ppe', 'Psat2g047920' => 'psa', 'Psat3g187960' => 'psa', 'Psat4g054640' => 'psa', 'Psat5g154920' => 'psa', 'Psat5g187280' => 'psa', 'Psat6g055960' => 'psa', 'Psat7g082760' => 'psa', 'PSO017G6941' => 'pso', 'PSO063G5819' => 'pso', 'PSO161G0049' => 'pso', 'PSO210G5055' => 'pso', 'PSO478G0410' => 'pso', 'PSO478G3293' => 'pso', 'PSO591G0255' => 'pso', 'PSO832G0402' => 'pso', 'PSO832G4493' => 'pso', 'QL02p058093' => 'qlo', 'QL03p028473' => 'qlo', 'QL03p033946' => 'qlo', 'QL04p081248' => 'qlo', 'QL10p014057' => 'qlo', 'QL93p0100_0473' => 'qlo', 'RcHm_v2.0_Chr3g0450371' => 'rch', 'RcHm_v2.0_Chr3g0493141' => 'rch', 'RcHm_v2.0_Chr4g0443551' => 'rch', 'RcHm_v2.0_Chr6g0289141' => 'rch', 'RcHm_v2.0_Chr7g0180061' => 'rch', 'Rhsim07G0073500' => 'rsi', 'Rhsim07G0073600' => 'rsi', 'Rhsim08G0163300' => 'rsi', 'Rhsim09G0093500' => 'rsi', 'Rhsim10G0177100' => 'rsi', 'Rhsim13G0032000' => 'rsi', 'Sabra02G0034200' => 'sbr', 'Sabra04G0058500' => 'sbr', 'Sabra05G0169500' => 'sbr', 'Sabra05G0169700' => 'sbr', 'Sabra08G0100800' => 'sbr', 'Sabra10G0080300' => 'sbr', 'Sabra12G0052200' => 'sbr', 'Sabra13G0039700' => 'sbr', 'Sabra15G0093100' => 'sbr', 'Sabra19G0017500' => 'sbr', 'Sabra19G0024800' => 'sbr', 'SalBow2G0267' => 'sbo', 'SalBow3G2533' => 'sbo', 'SalBow4G1624' => 'sbo', 'SalBow4G2942' => 'sbo', 'SalBow5G2915' => 'sbo', 'SalBow5G5303' => 'sbo', 'SalBow8G2324' => 'sbo', 'Sc04g0002260' => 'sci', 'Sc11g0004680' => 'sci', 'Sc12g0005900' => 'sci', 'Sc14g0006250' => 'sci', 'Sc14g0007010' => 'sci', 'Sc17g0000820' => 'sci', 'Sc20g0000480' => 'sci', 'Sed0000665' => 'sed', 'Sed0002349' => 'sed', 'Sed0008916' => 'sed', 'Sed0009362' => 'sed', 'Sed0017331' => 'sed', 'Sed0022345' => 'sed', 'Sed0025170' => 'sed', 'SEGI_24615' => 'sgi', 'SEGI_38649' => 'sgi', 'SGA_v2.0_scaffold151G36741' => 'sas', 'SGA_v2.0_scaffold172G38978' => 'sas', 'SGA_v2.0_scaffold467G52046' => 'sas', 'SGA_v2.0_scaffold59G20696' => 'sas', 'SGA_v2.0_scaffold7G04098' => 'sas', 'SHI04572' => 'shi', 'SHI31349' => 'shi', 'SMO353G0280' => 'smo', 'SMO358G0229' => 'smo', 'SMO358G0256' => 'smo', 'Solyc01g097040.4' => 'sly', 'Solyc03g113600.4' => 'sly', 'Solyc04g007870.3' => 'sly', 'Solyc09g066140.3' => 'sly', 'Solyc12g027730.2' => 'sly', 'Sopen01g040730' => 'spe', 'Sopen03g032640' => 'spe', 'Sopen04g003000' => 'spe', 'Sopen06g027500' => 'spe', 'Sopen09g027900' => 'spe', 'Sopen12g012800' => 'spe', 'Sp1g07440' => 'spa', 'Sp1g16950' => 'spa', 'Sp4g13200' => 'spa', 'Sp5g25930' => 'spa', 'Sp5g29960' => 'spa', 'Sp6g27430' => 'spa', 'TAR365G0784' => 'tar', 'TAR365G0801' => 'tar', 'TAR371G0372' => 'tar', 'TAR374G1686' => 'tar', 'TAR622G1439' => 'tar', 'TAR629G0701' => 'tar', 'TAR629G1069' => 'tar', 'TAR629G1109' => 'tar', 'TAR636G0853' => 'tar', 'TAR636G3474' => 'tar', 'THA.LOC104802934' => 'tha', 'THA.LOC104805830' => 'tha', 'THA.LOC104808028' => 'tha', 'THA.LOC104809139' => 'tha', 'THA.LOC104809233' => 'tha', 'THA.LOC104822999' => 'tha', 'THA.LOC104827190' => 'tha', 'Thecc.01G264500' => 'tca', 'Thecc.02G287900' => 'tca', 'Thecc.04G115100' => 'tca', 'Thecc.05G277800' => 'tca', 'Thecc.K0001400' => 'tca', 'Thhalv10006726m.g' => 'esa', 'Thhalv10007355m.g' => 'esa', 'Thhalv10012846m.g' => 'esa', 'Thhalv10016299m.g' => 'esa', 'Thhalv10018172m.g' => 'esa', 'Thhalv10019533m.g' => 'esa', 'TPR.G11839' => 'tpr', 'TPR.G13528' => 'tpr', 'TPR.G16960' => 'tpr', 'TPR.G17659' => 'tpr', 'TPR.G38367' => 'tpr', 'TPR.G5109' => 'tpr', 'TPR.G6980' => 'tpr', 'TPR.G8257' => 'tpr', 'TWI12G1468' => 'twi', 'TWI56G0758' => 'twi', 'TWI59G0855' => 'twi', 'TWI60G1684' => 'twi', 'TWI77G0794' => 'twi', 'TWI77G0873' => 'twi', 'TWI81G0147' => 'twi', 'unitig_0.g149' => 'ugi', 'unitig_26.g9631' => 'ugi', 'vmacro02637' => 'vma', 'vmacro07693' => 'vma', 'vmacro10670' => 'vma', 'vmacro13805' => 'vma', 'vmacro19337' => 'vma', 'VMungo0251G2314' => 'vmu', 'VMungo0540G0971' => 'vmu', 'VMungo0540G2059' => 'vmu', 'VMungo0647G2444' => 'vmu', 'VMungo0720G2556' => 'vmu', 'VMungo1215G0950' => 'vmu', 'VMungo1215G1813' => 'vmu', 'VMungo1215G2621' => 'vmu', 'VMungo1309G0691' => 'vmu', 'Zm00001eb048030' => 'zma', 'Zm00001eb054660' => 'zma', 'Zm00001eb151710' => 'zma', 'Zm00001eb216510' => 'zma', 'Zm00001eb223070' => 'zma', 'Zm00001eb398220' => 'zma', 'Zm00001eb403390' => 'zma' ) $gf_id = 'HOM05D000851' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000851' ) $data_identifier = 'HOM05D000851' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 8, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403390' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1